Index

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__init__() (DMDReduction method) (ODE method) (Reduce method) (ReduceUtils method) (SSM method) (System method)

A

add_parameters() (in module autoreduce.utils.sbml) add_reaction() (in module autoreduce.utils.sbml) add_species() (in module autoreduce.utils.sbml) apply_conservation_laws() (in module autoreduce.reductions.conservation) autoreduce.reductions.abundance module autoreduce.reductions.conservation module autoreduce.reductions.projection.dmd module autoreduce.reductions.timescale module autoreduce.solvers.ode module

autoreduce.solvers.ssm module autoreduce.system.control module autoreduce.system.system module autoreduce.utils.converters module autoreduce.utils.reduction module autoreduce.utils.sbml module

C

create_sbml_model() (in module autoreduce.utils.sbml)

create_system() (in module autoreduce.reductions.timescale)

D

DMDReduction (class in autoreduce.reductions.projection.dmd)

F

find_conserved_sets() (in module autoreduce.reductions.conservation) fit_dmd() (in module autoreduce.reductions.projection.dmd)

fit_dmdc() (in module autoreduce.reductions.projection.dmd) from_nonlinear_io_system() (in module autoreduce.system.control)

G

get_ODE() (in module autoreduce.utils.reduction) get_ode_solutions() (in module autoreduce.utils.reduction)

get_reducible() (in module autoreduce.utils.reduction) get_SSM() (in module autoreduce.utils.reduction)

L

load_ODE_model() (in module autoreduce.utils.converters)

load_sbml() (in module autoreduce.utils.converters)

M

module autoreduce.reductions.abundance autoreduce.reductions.conservation autoreduce.reductions.projection.dmd autoreduce.reductions.timescale autoreduce.solvers.ode autoreduce.solvers.ssm autoreduce.system.control autoreduce.system.system autoreduce.utils.converters autoreduce.utils.reduction autoreduce.utils.sbml

O

ODE (class in autoreduce.solvers.ode)

ode_to_sympy() (in module autoreduce.utils.converters)

R

Reduce (class in autoreduce.reductions.timescale)

reduce_utils() (in module autoreduce.utils.reduction) ReduceUtils (class in autoreduce.reductions.timescale)

S

setup_conservation_laws() (in module autoreduce.reductions.conservation) solve_approximations() (in module autoreduce.reductions.abundance) solve_conservation_laws() (in module autoreduce.reductions.conservation) solve_ode() (in module autoreduce.utils.reduction) solve_ODE_SSM() (in module autoreduce.utils.reduction) solve_sensitivity() (in module autoreduce.utils.reduction) solve_ssm() (in module autoreduce.utils.reduction)

solve_timescale_separation() (in module autoreduce.reductions.timescale) SSM (class in autoreduce.solvers.ssm) sympy_get_steady_state_solutions() (in module autoreduce.reductions.timescale) sympy_solve_and_substitute() (in module autoreduce.reductions.timescale) sympy_to_sbml() (in module autoreduce.utils.converters) sympy_variables_exist() (in module autoreduce.reductions.timescale) System (class in autoreduce.system.system)